Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs138094842 chr15:42119371 AATCCCAGCTACTCGGGAGGTTTAGGCAGGAG/A 1.98E-5 275 27.43 22.57 16.83 KM Plot
KIRP rs138105848 chr10:43162377 G/A 6.46E-5 288 25.57 27.75 11.43 KM Plot
KIRP rs138175485 chr16:8710756 AAAAT/A 5.74E-5 288 5.72 34.3 25.5 KM Plot
KIRP rs138234416 chr6:27992898 G/A 2.01E-8 288 25.62 26.4 9.77 KM Plot
KIRP rs138273422 chr19:8474125 G/A 3.58E-5 277 25.37 32.93 11.43 KM Plot
KIRP rs138278759 chr6:28055592 A/AAG 2.19E-8 287 25.62 27.8 9.77 KM Plot
KIRP rs138372213 chr16:90083699 C/G 1.34E-7 284 24.73 34.67 10.7 KM Plot
KIRP rs138417060 chr15:39554614 A/G 0 284 24.77 28.57 4.63 KM Plot
KIRP rs138533021 chr16:88051971 G/A 2.38E-11 282 25.62 25.57 8.6 KM Plot
KIRP rs138571091 chr17:30307759 GC/G 9.37E-12 286 26.6 23.85 10.37 KM Plot
KIRP rs138618662 chr20:29948035 A/G 0.000181 285 24.67 31.13 12.1 KM Plot
KIRP rs138828781 chr1:58985638 C/CAT 2.44E-5 288 25.6 26.82 13.17 KM Plot
KIRP rs138887541 chr6:28216427 A/AGAAACCTGTC 1.38E-8 289 25.6 26.4 9.77 KM Plot
KIRP rs138900422 chr21:44229869 ACT/A 0.000162 286 25.53 43.53 13.07 KM Plot
KIRP rs139051019 chr7:128995078 TTGC/T 0.000136 284 26.2 25.93 19.4 KM Plot